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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010088951.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 519aa MW: 57157.2 Da PI: 8.1053 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.5e-05 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_010088951.1 108 FVCEICNKGFQRDQNLQLHRRGH 130 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00039 | 185 | 207 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_010088951.1 185 WKCEKCSKKYAVQSDWKAHSKTC 207 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.01E-6 | 107 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 107 | 130 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 8.3E-5 | 108 | 130 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 108 | 130 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 150 | 180 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 173 | 206 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.01E-6 | 180 | 205 | No hit | No description |
SMART | SM00355 | 140 | 185 | 205 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MVEIGVRDGS GGGHEGVSLS SGNNNITAKE ETDHVVQVSV GKQERVENFH ASNSLSSTTT 60 LSNGSTTQQL VLDQSPPVKK KRNPPGNPDP SAEVVALSPN TLLARNRFVC EICNKGFQRD 120 QNLQLHRRGH NLPWKLKQRN SNEVIRRRVY ICPEPSCVHH NPARALGDLT GIKKHFCRKH 180 GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYKCECGTLF SRRDSFITHR AFCDAIAEEN 240 NKTTAQQLGP VPSNMQGRHP NLQTQISSRE LISSLINSSN IINMPPTNDN DNNKYHANNI 300 APTDQASEHD HQVLSKHNGN IIPSHLIMKN PLTPDHHHLH QLEYSQNGHN GYMSATALLQ 360 KAAQMGSTVS TASSALAPSS FGLDDHRQYG QGFNNNSSNS LGVFSGLIFD NGHNNHGNFV 420 NGNDVVLHGE SCDNMGLASG GGGDVLTVDF LGINGRSKRP GNLSNFHEHE KVQGVVNLHE 480 QNNKQAVLDH DHHDDHQAIR FNGGIGHLQG LSQFEGFNY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010088951.1 | 0.0 | Zinc finger protein MAGPIE | ||||
Swissprot | Q9SCQ6 | 1e-105 | IDD2_ARATH; Protein indeterminate-domain 2 | ||||
TrEMBL | W9R2U0 | 0.0 | W9R2U0_9R | ||||
STRING | POPTR_0005s02730.1 | 1e-129 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-94 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21396702 |